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<channel>
	<title>François Michonneau</title>
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	<link>http://francoismichonneau.net</link>
	<description>Sea cucumbers, marine biodiversity and informatics</description>
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			<item>
		<title>Ubuntu color palette for OpenOffice</title>
		<link>http://francoismichonneau.net/2010/02/ubuntu-color-openoffice/</link>
		<comments>http://francoismichonneau.net/2010/02/ubuntu-color-openoffice/#comments</comments>
		<pubDate>Sun, 28 Feb 2010 17:20:03 +0000</pubDate>
		<dc:creator>François</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://francoismichonneau.net/?p=104</guid>
		<description><![CDATA[I like the colors chosen by Ubuntu and I tend to use them for my presentations and posters. So, I [...]]]></description>
			<content:encoded><![CDATA[<p>I like the <a href="https://wiki.ubuntu.com/Artwork/Official">colors</a> chosen by Ubuntu and I tend to use them for my presentations and posters. So, I created a <a href="http://bit.ly/9i8kyl">palette</a> that can be imported in <a href="http://openoffice.org">OpenOffice</a>. How to use it?</p>
<ol>
<li>Download the <a href="http://bit.ly/9i8kyl">palette</a></li>
<li>In OpenOffice, go in Format > Area for instance</li>
<li>Click on the &#8220;Colors&#8221; tab</li>
<li>Click on the folder icon (&#8220;Load Color list&#8221;)</li>
<li>Browse for the file you downloaded</li>
<li>Enjoy, Ubuntu colors within OpenOffice</li>
</ol>
]]></content:encoded>
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		<item>
		<title>Sea cucumber podcast at the Encyclopedia of Life</title>
		<link>http://francoismichonneau.net/2010/02/sea-cucumber-podcast/</link>
		<comments>http://francoismichonneau.net/2010/02/sea-cucumber-podcast/#comments</comments>
		<pubDate>Thu, 18 Feb 2010 14:00:45 +0000</pubDate>
		<dc:creator>François</dc:creator>
				<category><![CDATA[Cukes in the news]]></category>

		<guid isPermaLink="false">http://francoismichonneau.net/?p=101</guid>
		<description><![CDATA[I just found this podcast about sea cucumbers on the Encyclopedia of Life (EOL) website. It provides a nice, short [...]]]></description>
			<content:encoded><![CDATA[<p>I just found this podcast about sea cucumbers on the Encyclopedia of Life (<a href="http://www.eol.org/">EOL</a>) website. It provides a nice, short and fun introduction to these wonderful animals: <a href="http://education.eol.org/podcast/sea-cucumber">http://education.eol.org/podcast/sea-cucumber</a>.</p>
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		</item>
		<item>
		<title>Invertebrates in the news</title>
		<link>http://francoismichonneau.net/2010/02/invertebrates-in-the-news/</link>
		<comments>http://francoismichonneau.net/2010/02/invertebrates-in-the-news/#comments</comments>
		<pubDate>Tue, 16 Feb 2010 03:46:50 +0000</pubDate>
		<dc:creator>François</dc:creator>
				<category><![CDATA[News]]></category>

		<guid isPermaLink="false">http://francoismichonneau.net/?p=96</guid>
		<description><![CDATA[While I am not in the field, I&#8217;ll write weekly on our lab&#8217;s blog (Adventures in Spineless Science) about invertebrates [...]]]></description>
			<content:encoded><![CDATA[<p>While I am not in the field, I&#8217;ll write weekly on our lab&#8217;s blog (<a href="http://spinelessscience.blogspot.com">Adventures in Spineless Science</a>) about invertebrates that got featured in the news. I aim to focus mainly on studies published in peer-reviewed journals and make them accessible to non-scientists.</p>
<p>I posted today the 3rd post. It&#8217;s about the new arthropod phylogeny published last week in Nature. To be notified about these entries you can subscribe to the <a href="http://spinelessscience.blogspot.com/feeds/posts/default?alt=rss">RSS feed</a> of our blog, or follow me on <a href="http://twitter.com/Francois_Invert">twitter</a> or on <a href="http://identi.ca/fr4nco1s">identi.ca</a>.</p>
<p>Here are the links for the last posts:</p>
<ul>
<li><a href="http://bit.ly/invertNews1">Invertebrates in the News #1</a>: the absence of sex life in bdelloid rotifers and a video of <em>Corynactis viridis</em></li>
<li><a href="http://bit.ly/invertNews2">Invertebrates in the news #2</a>: what can you find in a foot cube of a coral reef, a tropical cloud forest, etc. </li>
<li><a href="http://bit.ly/invertNews3">Invertebrates in the news #3</a>: a new arthropod tree of life.</li>
</ul>
<p>Don&#8217;t hesitate to <a href="mailto:francois.michonneau@gmail.com">send me</a> your comments and feedback.</p>
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		<item>
		<title>Garli 0.96b8 patched to be compiled in Ubuntu</title>
		<link>http://francoismichonneau.net/2009/07/garli-patched-for-ubuntu/</link>
		<comments>http://francoismichonneau.net/2009/07/garli-patched-for-ubuntu/#comments</comments>
		<pubDate>Sat, 04 Jul 2009 17:52:51 +0000</pubDate>
		<dc:creator>François</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://francoismichonneau.net/2009/07/garli-0-96b8-patched-to-be-compiled-in-ubuntu/</guid>
		<description><![CDATA[Since Hardy, Ubuntu includes gcc 4.3 which makes the compilation of Garli 0.96 to fail.
Derrick Zwickl provides a solution to [...]]]></description>
			<content:encoded><![CDATA[<p>Since Hardy, Ubuntu includes gcc 4.3 which makes the compilation of <a href="http://www.nescent.org/informatics/download.php?software_id=4">Garli 0.96</a> to fail.</p>
<p>Derrick Zwickl provides a solution to fix the problem on the <a href="https://www.nescent.org/wg_garli/FAQ">Garli FAQ</a>.</p>
<p>You can download below the patched source code which compiles nicely on my laptop with Ubuntu 9.04, I also provide the binary file (including the <a href="http://sourceforge.net/projects/ncl/">ncl library</a> v.2.1.06)</p>
<ul>
<li><a href="http://francoismichonneau.net/garli/garli-0.96b8-patched.tar.gz">patched source</a></li>
<li><a href="http://francoismichonneau.net/garli/Garli0.96b8">binary file</a>
</ul>
]]></content:encoded>
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		<item>
		<title>Stichopus herrmanni releasing gametes</title>
		<link>http://francoismichonneau.net/2009/03/stichopus-herrmanni-releasing-gametes/</link>
		<comments>http://francoismichonneau.net/2009/03/stichopus-herrmanni-releasing-gametes/#comments</comments>
		<pubDate>Sat, 28 Mar 2009 15:32:28 +0000</pubDate>
		<dc:creator>François</dc:creator>
				<category><![CDATA[Cukes in the news]]></category>

		<guid isPermaLink="false">http://francoismichonneau.net/?p=67</guid>
		<description><![CDATA[Have a look at this video showing Stichopus herrmanni releasing its gametes. This event was captured by Emmanuel Tardy in [...]]]></description>
			<content:encoded><![CDATA[<p>Have a look at this video showing <i>Stichopus herrmanni</i> releasing its gametes. This event was captured by Emmanuel Tardy in New Caledonia.</p>
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</div>
]]></content:encoded>
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		</item>
		<item>
		<title>Down-under</title>
		<link>http://francoismichonneau.net/2009/03/down-under/</link>
		<comments>http://francoismichonneau.net/2009/03/down-under/#comments</comments>
		<pubDate>Sat, 28 Mar 2009 15:14:55 +0000</pubDate>
		<dc:creator>François</dc:creator>
				<category><![CDATA[News]]></category>

		<guid isPermaLink="false">http://francoismichonneau.net/?p=62</guid>
		<description><![CDATA[I started the year in summer as I was in the southern hemisphere.
First, I participated to the 13th International Echinoderm [...]]]></description>
			<content:encoded><![CDATA[<p>I started the year in summer as I was in the southern hemisphere.</p>
<p>First, I participated to the 13<sup>th</sup> International Echinoderm Conference in Hobart, Tasmania. I presented there the latest results on the sea cucumber tree and a poster on the genus <i>Euapta</i>.</p>
<p>I then made my way north through the major museums of natural history of the East coast (Melbourne, Sydney, Brisbane) to look for some treasures in their holothurian collections.</p>
<p>Finally, I joined the CReefs expedition in Lizard Island to collect sea cucumbers and other marine invertebrates. You can learn more by reading the <a href="http://www.aims.gov.au/creefs/latest-field-trip.html">blog</a> of this trip written by Angus Livingston.</p>
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		<item>
		<title>Community phylogenetics seminar</title>
		<link>http://francoismichonneau.net/2008/12/community-phylogenetics-seminar/</link>
		<comments>http://francoismichonneau.net/2008/12/community-phylogenetics-seminar/#comments</comments>
		<pubDate>Mon, 15 Dec 2008 14:56:57 +0000</pubDate>
		<dc:creator>François</dc:creator>
				<category><![CDATA[News]]></category>

		<guid isPermaLink="false">http://francoismichonneau.net/?p=59</guid>
		<description><![CDATA[This Fall, I organized with Ben Bolker a seminar on community phylogenetics. You can see the paper we read here.
]]></description>
			<content:encoded><![CDATA[<p>This Fall, I organized with Ben Bolker a seminar on community phylogenetics. You can see the paper we read <a href="http://groups.google.com/group/commphylo/web/home">here</a>.</p>
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		<item>
		<title>Summer activities</title>
		<link>http://francoismichonneau.net/2008/08/summer-activities/</link>
		<comments>http://francoismichonneau.net/2008/08/summer-activities/#comments</comments>
		<pubDate>Mon, 04 Aug 2008 23:53:57 +0000</pubDate>
		<dc:creator>François</dc:creator>
				<category><![CDATA[News]]></category>

		<guid isPermaLink="false">http://francoismichonneau.net/?p=15</guid>
		<description><![CDATA[Since I came back from my field trip in the Indian Ocean, I have been busy.
First, I went to the [...]]]></description>
			<content:encoded><![CDATA[<p>Since I came back from my field trip in the Indian Ocean, I have been busy.</p>
<p>First, I went to the 11<sup>th</sup> International Coral Reef Symposium (<a href="http://www.nova.edu/ncri/11icrs/" target="_blank">ICRS</a>) in Fort Lauderdale (July 7-11) . Here are the abstracts for the talks I contributed to.</p>
<ul>
<li>Adjeroud M., Michonneau F., Edmunds P. J., Chancerelle Y., Penin L., Vidal-Dupiol J., Salvat B.,  Galzin R., 2008. Recurrent large-scale disturbances, recovery trajectories, and resilience of coral assemblages on a coral reef in the South-Central Pacific. <a href="http://francoismichonneau.net/articles/abstracts/Adjeroud+2008-ICRS.pdf">Abstract</a></li>
<li>Bruggemann H., Paulay G., Michonneau F., Malay M., Hubert N., Guillaume M. M. M., 2008. Diversity and diversification in the Southwest Indian Ocean (Program ANR BIOTAS). <a href="http://francoismichonneau.net/articles/abstracts/Bruggemann+2008-ICRS.pdf">Abstract</a></li>
<li>Michonneau F., Kim S., McPherson S., Netchy K., Starmer J., Kerr A., Paulay G., 2008. New insights into the biodiversity and evolution of aspidochirotid holothurians. <a href="http://francoismichonneau.net/articles/abstracts/Michonneau+2008-ICRS.pdf">Abstract</a></li>
<li>Penin L., Michonneau F., Baird A. H., Connolly S. R., Pratchett M. S., Kayal M., Adjeroud M., 2008. Importance of post-settlement mortality on scleractinian population maintenance around Moorea, French Polynesia. <a href="http://francoismichonneau.net/articles/abstracts/Penin+2008-ICRS.pdf">Abstract</a></li>
</ul>
<p>Then, I went to the 5<sup>th</sup> North American Echinoderm Conference (<a href="http://research.fit.edu/naec/" target="_blank">NAEC</a>), in Melbourne, FL. The sea cucumber PEET group was well represented:</p>
<ul>
<li>Campbell C., Honey M., Kenyon L., Kerr A., Kim S., Massin C., McPherson S., Mezali K., Michonneau F., Netchy K., O&#8217;Loughlin M., Paulay G., Pawson D., Rowe F., Samyn Y., Smiley S., Solis-Marin F., Starmer J., Thandar A., Van den Spiegel D., Werner T., 2008. The Holothurian PEET project and the Aspidochirotid working group: Integrative taxonomy on a large scale.</li>
<li>Kerr A. M., 2008. Sea cucumbers in Western literature from antiquity to Linnæus and beyond.</li>
<li>Michonneau F., Kim S., Kerr A., 2008. Holothurians of Kosrae (Federated States of Micronesia) and Majuro (Marshall Islands). Poster. <a href="http://francoismichonneau.net/articles/abstracts/Michonneau+2008-NAEC-Poster.pdf">Abstract</a></li>
<li>Michonneau F., Netchy K., Starmer J., McPherson S., Campbell C. A., Kenyon L., Kerr A. M., Paulay G., 2008. Speciation in Aspidochirotid holothurians. <a href="http://francoismichonneau.net/articles/abstracts/Michonneau+2008-NAEC.pdf">Abstract</a></li>
<li>Paulay G., Kerr A., Michonneau F., Netchy K., McPherson S., O&#8217;Loughlin M., Starmer J., 2008. The cucumber tree: phylogeny and evolution of holothurians, with a focus on Aspidochirotids.</li>
<li>Starmer J. &#038; Paulay G., 2008. Statistical analysis of tissue-specific ossicles in Holothurians.</li>
<li>Starmer J. &#038; Paulay G., 2008. Systematics and phylogeny of Stichopodidae (Aspidochirotida, Holothuroidea).</li>
<li>Werner, T. B., Skillings D., Chick B., 2008. Analysis of genetic population structure in the widely distributed tropical sea cucumber, <i>Holothuria (Halodeima) atra</i>.</li>
</ul>
<p>After these 2 conferences, I went at NESCent, on Duke campus to take the phyloinformatics summer course (aka <a href="http://nescent.org/courses/2008/comphy/" target="_blank">comphy</a>). You can also find more details about this course <a href="https://www.nescent.org/comphy/Main_Page" target="_blank">here</a>. I followed the R track and I learned a lot on comparative methods and their applications in R.</p>
<p>Before starting the new school year, I&#8217;m going to France for a couple of weeks&#8230;</p>
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		<item>
		<title>Trip in the Indian Ocean</title>
		<link>http://francoismichonneau.net/2008/06/trip-in-the-indian-ocean/</link>
		<comments>http://francoismichonneau.net/2008/06/trip-in-the-indian-ocean/#comments</comments>
		<pubDate>Thu, 26 Jun 2008 22:25:29 +0000</pubDate>
		<dc:creator>François</dc:creator>
				<category><![CDATA[News]]></category>

		<guid isPermaLink="false">http://francoismichonneau.net/?p=13</guid>
		<description><![CDATA[Tim Werner (University of Boston) wrote a blog for our recent expedition in Nosy Bé (Madagascar).
After this trip to Madagascar, [...]]]></description>
			<content:encoded><![CDATA[<p>Tim Werner (University of Boston) wrote a <a href="http://www.neaq.org/education_and_activities/blogs_webcams_videos_and_more/blogs/sea_cucumber_blog/" target="_blank">blog</a> for our recent expedition in Nosy Bé (Madagascar).</p>
<p>After this trip to Madagascar, Arthur Anker and I spent two weeks in Mayotte. We didn&#8217;t collect as heavily as we did in Madagascar but we found some interesting species. For sea cucumbers, all the big species that were very rare or absent in Nosy Bé, were relatively easy to find on Mayotte&#8217;s reefs.</p>
<p>Now I am preparing for <a href="http://www.nova.edu/ncri/11icrs/">ICRS</a>&#8230;</p>
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		<title>Morphbank workshop</title>
		<link>http://francoismichonneau.net/2008/05/morphbank-workshop/</link>
		<comments>http://francoismichonneau.net/2008/05/morphbank-workshop/#comments</comments>
		<pubDate>Sat, 03 May 2008 12:13:52 +0000</pubDate>
		<dc:creator>François</dc:creator>
				<category><![CDATA[News]]></category>

		<guid isPermaLink="false">http://francoismichonneau.net/?p=12</guid>
		<description><![CDATA[On May 1st and 2nd, I participated to the MorphBank usability workshop. It took place at FSU in Tallahassee. It [...]]]></description>
			<content:encoded><![CDATA[<p>On May 1<sup>st</sup> and 2<sup>nd</sup>, I participated to the <a href="http://www.morphbank.net">MorphBank</a> usability workshop. It took place at FSU in Tallahassee. It was the occasion to interact with the developers of this website and learn more about its functionalities. If you don&#8217;t know <a href="http://www.morphbank.net">MorphBank</a>, you should have a look at it. It hosts about 100,000 pictures of plants and animals. And now, there are even some sea cucumbers pictures including <i><a href="http://www.morphbank.net/?id=227081" target="_blank">Holothuria impatiens</a></i> and <i><a href="http://www.morphbank.net/?id=227167" target="_blank">Thelenota ananas</a></i> that I took in Kosrae.</p>
<p><a href="http://www.morphbank.net/?id=227081" target="_blank"><img src="http://www.morphbank.net/?id=227081&#038;imgType=Thumb" alt="Holothuria impatiens hot-linked from Morphbank"/></a><br />
<a href="http://www.morphbank.net/?id=227167" target="_blank"><img src="http://www.morphbank.net/?id=227167&#038;imgType=Thumb" alt="Thelenota ananas hot-linked from Morphbank"/></a></p>
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